SE-PGAdb
(Pangenome Allele Database of Salmonella enterica serovar Enteritidis)
wgMLST_Profiling DendroMaker     wgMLST_Profiling output sample DendroMaker
output sample		 Help
 

SE-PGAdb User Guide


Step 1: wgMLST_Profiling

wgMLST_Profiling input: upload genome contig files (Test Set)



wgMLST_Profiling output: graphical output example and explanation


The above image is an example of the graphical output of the wgMLST_Profiling.

Content of the wgMLST_Profiling output

  • Number of uploaded genomes
  • A summary of profile list
  • A continue execution button for Build Dendrogam
  • A download button for Download wgMLST profile


Step 2: DendroMaker

DendroMaker input: upload wgMLST profiles



DendroMaker output: graphical output example and explanation


The above image is an example of the graphical output of the DendroMaker.

Content of the DendroMaker output

  • Number of uploaded genomes
  • Profile list
  • Dendrogram
  • A summary of output files that users can download


 
 
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